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    {
      "page": "clean_names",
      "title": "Clean names",
      "topics": [
        "clean_names"
      ]
    },
    {
      "page": "cluster",
      "title": "Perform Clustering",
      "topics": [
        "cluster"
      ]
    },
    {
      "page": "col2grayscale",
      "title": "Color to Grayscale",
      "topics": [
        "col2grayscale"
      ]
    },
    {
      "page": "color_adjust",
      "title": "Adjust HSV Color",
      "topics": [
        "color_adjust"
      ]
    },
    {
      "page": "ddb_collect",
      "title": "Collect a lazy-read duckdb table",
      "topics": [
        "ddb_collect"
      ]
    },
    {
      "page": "ddb_data",
      "title": "Read CSV using DuckDB",
      "topics": [
        "ddb_data"
      ]
    },
    {
      "page": "ddSci",
      "title": "Format Numbers for Printing",
      "topics": [
        "ddSci"
      ]
    },
    {
      "page": "decomp",
      "title": "Perform Data Decomposition",
      "topics": [
        "decomp"
      ]
    },
    {
      "page": "describe",
      "title": "Describe object",
      "topics": [
        "describe"
      ]
    },
    {
      "page": "df_movecolumn",
      "title": "Move data frame column",
      "topics": [
        "df_movecolumn"
      ]
    },
    {
      "page": "df_nunique_perfeat",
      "title": "Unique values per feature",
      "topics": [
        "df_nunique_perfeat"
      ]
    },
    {
      "page": "draw_3Dscatter",
      "title": "Interactive 3D Scatter Plots",
      "topics": [
        "draw_3Dscatter"
      ]
    },
    {
      "page": "draw_bar",
      "title": "Interactive Barplots",
      "topics": [
        "draw_bar"
      ]
    },
    {
      "page": "draw_box",
      "title": "Interactive Boxplots & Violin plots",
      "topics": [
        "draw_box"
      ]
    },
    {
      "page": "draw_calibration",
      "title": "Draw calibration plot",
      "topics": [
        "draw_calibration"
      ]
    },
    {
      "page": "draw_confusion",
      "title": "Plot confusion matrix",
      "topics": [
        "draw_confusion"
      ]
    },
    {
      "page": "draw_dist",
      "title": "Draw Distributions using Histograms and Density Plots",
      "topics": [
        "draw_dist"
      ]
    },
    {
      "page": "draw_fit",
      "title": "True vs. Predicted Plot",
      "topics": [
        "draw_fit"
      ]
    },
    {
      "page": "draw_graphD3",
      "title": "Plot graph using 'networkD3'",
      "topics": [
        "draw_graphD3"
      ]
    },
    {
      "page": "draw_graphjs",
      "title": "Plot network using 'threejs::graphjs'",
      "topics": [
        "draw_graphjs"
      ]
    },
    {
      "page": "draw_heatmap",
      "title": "Interactive Heatmaps",
      "topics": [
        "draw_heatmap"
      ]
    },
    {
      "page": "draw_leaflet",
      "title": "Plot interactive choropleth map using 'leaflet'",
      "topics": [
        "draw_leaflet"
      ]
    },
    {
      "page": "draw_pie",
      "title": "Interactive Pie Chart",
      "topics": [
        "draw_pie"
      ]
    },
    {
      "page": "draw_protein",
      "title": "Plot an amino acid sequence with annotations",
      "topics": [
        "draw_protein"
      ]
    },
    {
      "page": "draw_pvals",
      "title": "Barplot p-values using draw_bar",
      "topics": [
        "draw_pvals"
      ]
    },
    {
      "page": "draw_roc",
      "title": "Draw ROC curve",
      "topics": [
        "draw_roc"
      ]
    },
    {
      "page": "draw_scatter",
      "title": "Interactive Scatter Plots",
      "topics": [
        "draw_scatter"
      ]
    },
    {
      "page": "draw_spectrogram",
      "title": "Interactive Spectrogram",
      "topics": [
        "draw_spectrogram"
      ]
    },
    {
      "page": "draw_survfit",
      "title": "Draw a survfit object",
      "topics": [
        "draw_survfit"
      ]
    },
    {
      "page": "draw_table",
      "title": "Simple HTML table",
      "topics": [
        "draw_table"
      ]
    },
    {
      "page": "draw_ts",
      "title": "Interactive Timeseries Plots",
      "topics": [
        "draw_ts"
      ]
    },
    {
      "page": "draw_varimp",
      "title": "Interactive Variable Importance Plot",
      "topics": [
        "draw_varimp"
      ]
    },
    {
      "page": "draw_volcano",
      "title": "Volcano Plot",
      "topics": [
        "draw_volcano"
      ]
    },
    {
      "page": "draw_xt",
      "title": "Plot timeseries data",
      "topics": [
        "draw_xt"
      ]
    },
    {
      "page": "dt_describe",
      "title": "Describe data.table",
      "topics": [
        "dt_describe"
      ]
    },
    {
      "page": "dt_inspect_types",
      "title": "Inspect column types",
      "topics": [
        "dt_inspect_types"
      ]
    },
    {
      "page": "dt_keybin_reshape",
      "title": "Long to wide key-value reshaping",
      "topics": [
        "dt_keybin_reshape"
      ]
    },
    {
      "page": "dt_merge",
      "title": "Merge data.tables",
      "topics": [
        "dt_merge"
      ]
    },
    {
      "page": "dt_names_by_attr",
      "title": "List column names by attribute",
      "topics": [
        "dt_names_by_attr"
      ]
    },
    {
      "page": "dt_nunique_perfeat",
      "title": "Number of unique values per feature",
      "topics": [
        "dt_nunique_perfeat"
      ]
    },
    {
      "page": "dt_pctmatch",
      "title": "Get N and percent match of values between two columns of two data.tables",
      "topics": [
        "dt_pctmatch"
      ]
    },
    {
      "page": "dt_pctmissing",
      "title": "Get percent of missing values from every column",
      "topics": [
        "dt_pctmissing"
      ]
    },
    {
      "page": "dt_set_autotypes",
      "title": "Set column types automatically",
      "topics": [
        "dt_set_autotypes"
      ]
    },
    {
      "page": "dt_set_clean_all",
      "title": "Clean column names and factor levels _*in-place*_",
      "topics": [
        "dt_set_clean_all"
      ]
    },
    {
      "page": "dt_set_cleanfactorlevels",
      "title": "Clean factor levels of data.table _*in-place*_",
      "topics": [
        "dt_set_cleanfactorlevels"
      ]
    },
    {
      "page": "dt_set_logical2factor",
      "title": "Convert data.table logical columns to factors",
      "topics": [
        "dt_set_logical2factor"
      ]
    },
    {
      "page": "dt_set_one_hot",
      "title": "Convert data.table's factor to one-hot encoding _*in-place*_",
      "topics": [
        "dt_set_one_hot"
      ]
    },
    {
      "page": "exc",
      "title": "Exclude columns by character or numeric vector.",
      "topics": [
        "exc"
      ]
    },
    {
      "page": "feature_matrix",
      "title": "Convert tabular data to feature matrix",
      "topics": [
        "feature_matrix"
      ]
    },
    {
      "page": "feature_names",
      "title": "Get feature names",
      "topics": [
        "feature_names"
      ]
    },
    {
      "page": "features",
      "title": "Get features from tabular data",
      "topics": [
        "features"
      ]
    },
    {
      "page": "get_factor_names",
      "title": "Get factor names",
      "topics": [
        "get_factor_names"
      ]
    },
    {
      "page": "get_mode",
      "title": "Get the mode of a factor or integer",
      "topics": [
        "get_mode"
      ]
    },
    {
      "page": "get_msg_sink",
      "title": "Get the current rtemis message sink",
      "topics": [
        "get_msg_sink"
      ]
    },
    {
      "page": "get_palette",
      "title": "Get Color Palette",
      "topics": [
        "get_palette"
      ]
    },
    {
      "page": "getnames",
      "title": "Get names by string matching or class",
      "topics": [
        "getcharacternames",
        "getdatenames",
        "getfactornames",
        "getlogicalnames",
        "getnames",
        "getnumericnames"
      ]
    },
    {
      "page": "getnamesandtypes",
      "title": "Get data.frame names and types",
      "topics": [
        "getnamesandtypes"
      ]
    },
    {
      "page": "inc",
      "title": "Select (include) columns by character or numeric vector.",
      "topics": [
        "inc"
      ]
    },
    {
      "page": "index_col_by_attr",
      "title": "Index columns by attribute name & value",
      "topics": [
        "index_col_by_attr"
      ]
    },
    {
      "page": "init_project_dir",
      "title": "Initialize Project Directory",
      "topics": [
        "init_project_dir"
      ]
    },
    {
      "page": "inspect",
      "title": "Inspect rtemis object",
      "topics": [
        "inspect"
      ]
    },
    {
      "page": "inspect_type",
      "title": "Inspect character and factor vector",
      "topics": [
        "inspect_type"
      ]
    },
    {
      "page": "is_constant",
      "title": "Check if vector is constant",
      "topics": [
        "is_constant"
      ]
    },
    {
      "page": "labelify",
      "title": "Format text for label printing",
      "topics": [
        "labelify"
      ]
    },
    {
      "page": "massGLM",
      "title": "Mass-univariate GLM Analysis",
      "topics": [
        "massGLM"
      ]
    },
    {
      "page": "matchcases",
      "title": "Match cases by covariates",
      "topics": [
        "matchcases"
      ]
    },
    {
      "page": "mgetnames",
      "title": "Get names by string matching multiple patterns",
      "topics": [
        "mgetnames"
      ]
    },
    {
      "page": "names_by_class",
      "title": "List column names by class",
      "topics": [
        "names_by_class"
      ]
    },
    {
      "page": "one_hot2factor",
      "title": "Convert one-hot encoded matrix to factor",
      "topics": [
        "one_hot2factor"
      ]
    },
    {
      "page": "outcome",
      "title": "Get the outcome as a vector",
      "topics": [
        "outcome"
      ]
    },
    {
      "page": "outcome_name",
      "title": "Get the name of the last column",
      "topics": [
        "outcome_name"
      ]
    },
    {
      "page": "plot_manhattan",
      "title": "Manhattan plot",
      "topics": [
        "plot_manhattan",
        "plot_manhattan.MassGLM"
      ]
    },
    {
      "page": "plot_roc",
      "title": "Plot ROC curve",
      "topics": [
        "plot_roc"
      ]
    },
    {
      "page": "plot_true_pred",
      "title": "Plot True vs. Predicted Values",
      "topics": [
        "plot_true_pred"
      ]
    },
    {
      "page": "plot_varimp",
      "title": "Plot Variable Importance",
      "topics": [
        "plot_varimp"
      ]
    },
    {
      "page": "plot.MassGLM",
      "title": "Plot MassGLM using volcano plot",
      "topics": [
        "plot.MassGLM"
      ]
    },
    {
      "page": "preprocess",
      "title": "Preprocess Data",
      "topics": [
        "preprocess",
        "preprocess.class_tabular.Preprocessor",
        "preprocess.class_tabular.PreprocessorConfig"
      ]
    },
    {
      "page": "preprocessed",
      "title": "Get preprocessed data from 'Preprocessor'.",
      "topics": [
        "preprocessed"
      ]
    },
    {
      "page": "present",
      "title": "Present rtemis object",
      "topics": [
        "present"
      ]
    },
    {
      "page": "previewcolor",
      "title": "Preview color",
      "topics": [
        "previewcolor"
      ]
    },
    {
      "page": "read",
      "title": "Read tabular data from a variety of formats",
      "topics": [
        "read"
      ]
    },
    {
      "page": "read_config",
      "title": "Read 'SuperConfig' from TOML file",
      "topics": [
        "read_config"
      ]
    },
    {
      "page": "regression_metrics",
      "title": "Regression Metrics",
      "topics": [
        "regression_metrics"
      ]
    },
    {
      "page": "resample",
      "title": "Resample data",
      "topics": [
        "resample"
      ]
    },
    {
      "page": "rnormmat",
      "title": "Random Normal Matrix",
      "topics": [
        "rnormmat"
      ]
    },
    {
      "page": "rtemis_colors",
      "title": "rtemis Color System",
      "topics": [
        "rtemis_colors"
      ]
    },
    {
      "page": "rtversion",
      "title": "Get rtemis version and system info",
      "topics": [
        "rtversion"
      ]
    },
    {
      "page": "runifmat",
      "title": "Random Uniform Matrix",
      "topics": [
        "runifmat"
      ]
    },
    {
      "page": "set_msg_sink",
      "title": "Set the rtemis message sink",
      "topics": [
        "set_msg_sink"
      ]
    },
    {
      "page": "set_outcome",
      "title": "Move outcome to last column",
      "topics": [
        "set_outcome"
      ]
    },
    {
      "page": "setdiffsym",
      "title": "Symmetric Set Difference",
      "topics": [
        "setdiffsym"
      ]
    },
    {
      "page": "setup_CART",
      "title": "Setup CART Hyperparameters",
      "topics": [
        "setup_CART"
      ]
    },
    {
      "page": "setup_CMeans",
      "title": "Setup CMeansConfig",
      "topics": [
        "setup_CMeans"
      ]
    },
    {
      "page": "setup_DBSCAN",
      "title": "Setup DBSCANConfig",
      "topics": [
        "setup_DBSCAN"
      ]
    },
    {
      "page": "setup_ExecutionConfig",
      "title": "Setup Execution Configuration",
      "topics": [
        "setup_ExecutionConfig"
      ]
    },
    {
      "page": "setup_GAM",
      "title": "Setup GAM Hyperparameters",
      "topics": [
        "setup_GAM"
      ]
    },
    {
      "page": "setup_GLM",
      "title": "Setup GLM Hyperparameters",
      "topics": [
        "setup_GLM"
      ]
    },
    {
      "page": "setup_GLMNET",
      "title": "Setup GLMNET Hyperparameters",
      "topics": [
        "setup_GLMNET"
      ]
    },
    {
      "page": "setup_GridSearch",
      "title": "Setup Grid Search Config",
      "topics": [
        "setup_GridSearch"
      ]
    },
    {
      "page": "setup_HardCL",
      "title": "Setup HardCLConfig",
      "topics": [
        "setup_HardCL"
      ]
    },
    {
      "page": "setup_ICA",
      "title": "setup_ICA",
      "topics": [
        "setup_ICA"
      ]
    },
    {
      "page": "setup_Isomap",
      "title": "Setup Isomap config.",
      "topics": [
        "setup_Isomap"
      ]
    },
    {
      "page": "setup_Isotonic",
      "title": "Setup Isotonic Hyperparameters",
      "topics": [
        "setup_Isotonic"
      ]
    },
    {
      "page": "setup_KMeans",
      "title": "Setup KMeansConfig",
      "topics": [
        "setup_KMeans"
      ]
    },
    {
      "page": "setup_LightCART",
      "title": "Setup LightCART Hyperparameters",
      "topics": [
        "setup_LightCART"
      ]
    },
    {
      "page": "setup_LightGBM",
      "title": "Setup LightGBM Hyperparameters",
      "topics": [
        "setup_LightGBM"
      ]
    },
    {
      "page": "setup_LightRF",
      "title": "Setup LightRF Hyperparameters",
      "topics": [
        "setup_LightRF"
      ]
    },
    {
      "page": "setup_LightRuleFit",
      "title": "Setup LightRuleFit Hyperparameters",
      "topics": [
        "setup_LightRuleFit"
      ]
    },
    {
      "page": "setup_LinearSVM",
      "title": "Setup LinearSVM Hyperparameters",
      "topics": [
        "setup_LinearSVM"
      ]
    },
    {
      "page": "setup_NeuralGas",
      "title": "Setup NeuralGasConfig",
      "topics": [
        "setup_NeuralGas"
      ]
    },
    {
      "page": "setup_NMF",
      "title": "Setup NMF config.",
      "topics": [
        "setup_NMF"
      ]
    },
    {
      "page": "setup_PCA",
      "title": "Setup PCA config.",
      "topics": [
        "setup_PCA"
      ]
    },
    {
      "page": "setup_Preprocessor",
      "title": "Setup Preprocessor",
      "topics": [
        "setup_Preprocessor"
      ]
    },
    {
      "page": "setup_RadialSVM",
      "title": "Setup RadialSVM Hyperparameters",
      "topics": [
        "setup_RadialSVM"
      ]
    },
    {
      "page": "setup_Ranger",
      "title": "Setup Ranger Hyperparameters",
      "topics": [
        "setup_Ranger"
      ]
    },
    {
      "page": "setup_Resampler",
      "title": "Setup Resampler",
      "topics": [
        "setup_Resampler"
      ]
    },
    {
      "page": "setup_SuperConfig",
      "title": "Setup SuperConfig",
      "topics": [
        "setup_SuperConfig"
      ]
    },
    {
      "page": "setup_SuperConfigLive",
      "title": "Setup SuperConfigLive",
      "topics": [
        "setup_SuperConfigLive"
      ]
    },
    {
      "page": "setup_TabNet",
      "title": "Setup TabNet Hyperparameters",
      "topics": [
        "setup_TabNet"
      ]
    },
    {
      "page": "setup_tSNE",
      "title": "Setup tSNE config.",
      "topics": [
        "setup_tSNE"
      ]
    },
    {
      "page": "setup_UMAP",
      "title": "Setup UMAP config.",
      "topics": [
        "setup_UMAP"
      ]
    },
    {
      "page": "size",
      "title": "Size of object",
      "topics": [
        "size"
      ]
    },
    {
      "page": "table_column_attr",
      "title": "Tabulate column attributes",
      "topics": [
        "table_column_attr"
      ]
    },
    {
      "page": "theme",
      "title": "Themes for draw_* functions",
      "topics": [
        "theme_black",
        "theme_blackgrid",
        "theme_blackigrid",
        "theme_darkgray",
        "theme_darkgraygrid",
        "theme_darkgrayigrid",
        "theme_lightgraygrid",
        "theme_mediumgraygrid",
        "theme_white",
        "theme_whitegrid",
        "theme_whiteigrid"
      ]
    },
    {
      "page": "train",
      "title": "Train Supervised Learning Models",
      "topics": [
        "train"
      ]
    },
    {
      "page": "uniprot_get",
      "title": "Get protein sequence from UniProt",
      "topics": [
        "uniprot_get"
      ]
    },
    {
      "page": "with_msg_sink",
      "title": "Run code with a temporary message sink",
      "topics": [
        "with_msg_sink"
      ]
    },
    {
      "page": "write_toml",
      "title": "Write to TOML file",
      "topics": [
        "write_toml"
      ]
    },
    {
      "page": "xt_example",
      "title": "Example longitudinal dataset",
      "topics": [
        "xt_example"
      ]
    },
    {
      "page": "xtdescribe",
      "title": "Describe longitudinal dataset",
      "topics": [
        "xtdescribe"
      ]
    }
  ],
  "_pkglogo": "https://github.com/rtemis-org/rtemis/raw/HEAD/man/figures/logo.svg",
  "_readme": "https://github.com/rtemis-org/rtemis/raw/HEAD/README.md",
  "_rundeps": [
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    "cli",
    "codetools",
    "data.table",
    "digest",
    "fastmap",
    "future",
    "globals",
    "htmltools",
    "listenv",
    "parallelly",
    "rlang",
    "S7"
  ],
  "_score": 8.016598827524763,
  "_indexed": true,
  "_nocasepkg": "rtemis",
  "_universes": [
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    "egenn"
  ],
  "_binaries": [
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